Open Source R Software
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R Software
Browse free open source R Software and projects below. Use the toggles on the left to filter open source R Software by OS, license, language, programming language, and project status.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Run applications fast and securely in a fully managed environmentRun frontend and backend services, batch jobs, deploy websites and applications, and queue processing workloads without the need to manage infrastructure.
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ggplot2
An implementation of the Grammar of Graphics in R
ggplot2 is a system written in R for declaratively creating graphics. It is based on The Grammar of Graphics, which focuses on following a layered approach to describe and construct visualizations or graphics in a structured manner. With ggplot2 you simply provide the data, tell ggplot2 how to map variables to aesthetics, what graphical primitives to use, and it will take care of the rest. ggplot2 is over 10 years old and is used by hundreds of thousands of people all over the world for plotting. In most cases using ggplot2 starts with supplying a dataset and aesthetic mapping (with aes()); adding on layers (like geom_point() or geom_histogram()), scales (like scale_colour_brewer()), and faceting specifications (like facet_wrap()); and finally, coordinating systems. ggplot2 has a rich ecosystem of community-maintained extensions for those looking for more innovation. ggplot2 is a part of the tidyverse, an ecosystem of R packages designed for data science. -
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pagedown
Paginate the HTML Output of R Markdown with CSS for Print
Paginate the HTML Output of R Markdown with CSS for Print. You only need a modern web browser (e.g., Google Chrome or Microsoft Edge) to generate PDF. No need to install LaTeX to get beautiful PDFs. This R package stands on the shoulders of two giants to support typesetting with CSS for R Markdown documents: Paged.js and ReLaXed (we only borrowed some CSS from the ReLaXed repo and didn't really use the Node package). -
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Introduction to Zig
An open, technical and introductory book for the Zig programming lang
This is the official repository for the book "Introduction to Zig: a project-based Book", written by Pedro Duarte Faria. To know more about the book, check out the About this book section below. You can read the current version of the book in your web browser. The book is built using the publishing system Quarto in conjunction with a little bit of R code (zig_engine.R), which is responsible for calling the Zig compiler to compile and run the Zig code examples. -
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Paper2GUI
Convert AI papers to GUI
Convert AI papers to GUI，Make it easy and convenient for everyone to use artificial intelligence technology。让每个人都简单方便的使用前沿人工智能技术 Paper2GUI: An AI desktop APP toolbox for ordinary people. It can be used immediately without installation. It already supports 40+ AI models, covering AI painting, speech synthesis, video frame complementing, video super-resolution, object detection, and image stylization. , OCR recognition and other fields. Support Windows, Mac, Linux systems. Paper2GUI: 一款面向普通人的 AI 桌面 APP 工具箱，免安装即开即用，已支持 40+AI 模型，内容涵盖 AI 绘画、语音合成、视频补帧、视频超分、目标检测、图片风格化、OCR 识别等领域。支持 Windows、Mac、Linux 系统。 -
Curtain LogTrace File Activity MonitoringCurtain LogTrace File Activity Monitoring is an enterprise file activity monitoring solution. It tracks user actions: create, copy, move, delete, rename, print, open, close, save. Includes source/destination paths and disk type. Perfect for monitoring user file activities.
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server, and translated to Julia data structures by Julia. The results of function calls are likewise translated back to R. Complex Julia structures can either be used by reference via proxy objects in R or fully translated to R data structures. -
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mathpix
Query the mathpix API to convert math images to LaTeX
Query the mathpix API to convert math images to LaTeX. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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pointblank
Data quality assessment and metadata reporting for data frames
With the pointblank package it’s really easy to methodically validate your data whether in the form of data frames or as database tables. On top of the validation toolset, the package gives you the means to provide and keep up-to-date with the information that defines your tables. For table validation, the agent object works with a large collection of simple (yet powerful!) validation functions. We can enable much more sophisticated validation checks by using custom expressions, segmenting the data, and by selective mutations of the target table. The suite of validation functions ensures that everything just works no matter whether your table is a data frame or a database table. Sometimes, we want to maintain table information and update it when the table goes through changes. For that, we can use an informant object plus associated functions to help define the metadata entries and present it as a data dictionary. -
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Awesome Network Analysis
A curated list of awesome network analysis resources
awesome-network-analysis is a curated list of resources focused on network and graph analysis, including libraries, frameworks, visualization tools, datasets, and academic papers. It covers multiple programming languages and domains like sociology, biology, and computer science. This repository serves as a central reference for researchers, analysts, and developers working with network data. -
The most advanced C and C++ source code analyzerTrustInSoft Analyzer is a C and C++ source code analyzer powered by formal methods, mathematical & logical reasonings that allow for exhaustive analysis of source code. This analysis can be run without false positives or false negatives, so that every real bug in the code is found. Developers receive several benefits: a user-friendly graphical interface that directs developers to the root cause of bugs, and instant utility to expand the coverage of their existing tests. Unlike traditional source code analysis tools, TrustInSoft’s solution is not only the most comprehensive approach on the market but is also progressive, instantly deployable by developers, even if they lack experience with formal methods, from exhaustive analysis up to a functional proof that the software developed meets specifications.
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golem
A Framework for Building Robust Shiny Apps
golem is an opinionated framework for developing production-grade Shiny applications in R, treating the app like a full R package. It scaffolds project structure, testing, documentation, CI/CD, and supports containerization—streamlining the build-to-deploy pipeline while enforcing clean architecture and maintainability. -
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rmarkdown
Dynamic Documents for R
R Markdown is an R package for creating dynamic, reproducible documents that combine code (R, Python, SQL, etc.), results (figures, tables), and narrative text. Built on Knitr and Pandoc, it supports generating HTML, PDF, Word, slideshows, dashboards, and more. It’s widely used in data science and reproducible reporting workflows. -
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TinyTeX
Cross-platform, portable, and easy-to-maintain LaTeX distribution
A lightweight, cross-platform, portable, and easy-to-maintain LaTeX distribution based on TeX Live. TinyTeX, is a custom LaTeX distribution based on TeX Live that is small in size but still functions well in most cases. Even if you run into the problem of missing LaTeX packages, it should be super clear to you what you need to do. In fact, if you are an R Markdown user, there is nothing you need to do, because missing packages will just be installed automatically. You may not even know the existence of LaTeX at all since it should rarely bother you. Currently, TinyTeX works best for R users. Other users can use it, too—it is just that missing LaTeX packages won’t be automatically installed, and you need to install them manually. Or you can go to the extreme to install all packages, but remember there are thousands of them. -
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blavaan
An R package for Bayesian structural equation modeling
blavaan is a free, open-source R package for Bayesian latent variable analysis. It relies on JAGS and Stan to estimate models via MCMC. The blavaan functions and syntax are similar to lavaan. The development version of blavaan (containing updates not yet on CRAN) can be installed via the command provided in the documentation. Compilation is required; this may be a problem for users who currently rely on a binary version of blavaan from CRAN. The blavaan package depends on the lavaan package for model specification and for some computations. This means that, if you already know lavaan, then you should already be able to do many things in blavaan. In particular, many blavaan commands add the letter “b” to the start of the lavaan command. It is also sometimes possible to use a lavaan command on a blavaan object, though the results may not always be what you expect. -
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covid19model
Code for modelling estimated deaths and cases for COVID19
Code for modeling estimated deaths and infections for COVID-19 from "Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe", Flaxman, Mishra, Gandy et al, Nature, 2020, the published version of our original Report 13. This is the release related to our Tiers paper, where we use the latent factor model to estimate the effectiveness of tiers systems in England. Peer-reviewed version is to be out soon. All other code is still the same for previous releases. The code should be run in full mode to obtain credible results. Not running a full run to estimate anything is not recommended and discouraged. Only a full run should be used to get results. -
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esquisse
RStudio add-in to make plots interactively with ggplot2
The purpose of this add-in is to let you explore your data quickly to extract the information they hold. You can create visualization with {ggplot2}, filter data with {dplyr} and retrieve generated code. This addin allows you to interactively explore your data by visualizing it with the ggplot2 package. It allows you to draw bar plots, curves, scatter plots, histograms, boxplot and sf objects, then export the graph or retrieve the code to reproduce the graph. This addin allows you to interactively explore your data by visualizing it with the ggplot2 package. It allows you to draw bar plots, curves, scatter plots, histograms, boxplot and sf objects, then export the graph or retrieve the code to reproduce the graph. -
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purrr
A functional programming toolkit for R
purrr enhances R’s functional programming capabilities by providing a consistent set of tools for working with lists and vectors, enabling safer and more expressive iteration compared to base R’s loop functions. -
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tidyverse
Easily install and load packages from the tidyverse
tidyverse is a meta‑package that installs and loads a cohesive suite of R packages designed for data science, sharing underlying design principles, grammar, and data structures. Core components include ggplot2, dplyr, tidyr, readr, purrr, tibble, stringr, forcats, and more. It promotes tidy data workflows and consistency across tasks. -
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RStudio Cheatsheets
Curated collection of official cheat sheets for data science tools
The cheatsheets repository from RStudio is a curated collection of official cheat sheets for R, RStudio, the tidyverse, Shiny, and related data science tools. Each cheat sheet is a single (or double) page PDF that condenses important syntax, functions, workflows, and best practices into a visually organized format ideal for quick reference. The repository contains source files (R Markdown or LaTeX) that generate the cheat sheets, version history, and metadata (title, author, description) for each. It covers topics such as data wrangling, data import, modeling, visualization, RStudio IDE shortcuts, Shiny development, and the tidyverse suite (dplyr, ggplot2, tidyr, purrr). These cheat sheets are widely used by R learners, educators, and practitioners as quick reference tools, and they often ship with RStudio by default or are linked from RStudio’s help/documentation pages. Users can also contribute new cheat sheet proposals, corrections, or translations via pull requests. -
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caret
caret (Classification And Regression Training) R package
The caret (Classification And Regression Training) R package streamlines the process of building predictive machine learning models. It provides uniform interfaces for model training, tuning, evaluation, preprocessing, and variable importance. With support for over 200 models, caret is foundational for R workflows in modeling and machine learning. -
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dplyr
dplyr: A grammar of data manipulation
dplyr is an R package that provides a consistent and intuitive grammar for data manipulation, enabling users to filter, arrange, summarize, and transform data efficiently. Part of the tidyverse ecosystem, dplyr simplifies complex data operations through a clear and readable syntax, whether working with data frames, tibbles, or databases. It is widely used in data science and statistical analysis workflows. -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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DiagrammeR
Graph and network visualization using tabular data in R
DiagrammeR is an R package to create, manipulate, and visualize network graphs, flowcharts, diagrams, and more using Graphviz and Mermaid syntax. Integrates with RMarkdown and Shiny apps, supports node/edge traversal, and graph analysis algorithms, making it ideal for documenting processes, causal relationships, or data pipelines. -
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IRkernel
R kernel for Jupyter
For detailed requirements and install instructions see irkernel.github.io. Per default IRkernel::installspec() will install a kernel with the name “ir” and a display name of “R”. Multiple calls will overwrite the kernel with a kernel spec pointing to the last R interpreter you called that commands from. You can install kernels for multiple versions of R by supplying a name and display name argument to the install spec() call (You still need to install these packages in all interpreters you want to run as a Jupyter kernel!): -
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NYC Taxi Data
Import public NYC taxi and for-hire vehicle (Uber, Lyft)
The nyc-taxi-data repository is a rich dataset and exploratory project around New York City taxi trip records. It collects and preprocesses large-scale trip datasets (fares, pickup/dropoff, timestamps, locations, passenger counts) to enable data analysis, modeling, and visualization efforts. The project includes scripts and notebooks for cleaning and filtering the raw data, memory-efficient processing for large CSV/Parquet files, and aggregation workflows (e.g. trips per hour, heatmaps of pickups/dropoffs). It also contains example analyses—spatial and temporal visualizations like maps, time-series plots, and hotspot detection—highlighting insights such as patterns of demand, peak times, and geospatial distributions. The repository is often used as a benchmark dataset and example for teaching, benchmarking, and demonstration purposes in the data science and urban analytics communities. -
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ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
This repository contains the second programming assignment for an R course, focused on caching expensive computations by leveraging R’s scoping rules. The assignment walks you through creating a special matrix object that stores both a matrix and its cached inverse, avoiding repeated calls to costly operations. It builds on a worked example that caches the mean of a numeric vector, demonstrating how the operator preserves state across function calls. You then implement analogous logic for matrices via two functions, one to construct the cache-aware object and another to compute or retrieve the cached inverse. The instructions emphasize using solve for inversion and assuming that the supplied matrix is always invertible. The repository outlines the workflow for forking, editing the provided R stub, committing your solution, and submitting your repository URL as the final deliverable.
