https://sourceforge.net/p/htseq/activity/Recent activity for HTSeqenThu, 19 Sep 2019 10:19:21 -0000https://sourceforge.net/p/htseq/support-requests/35/?limit=25#b4a3Hi Katy the SourceForge page is dead since years. Please repost your support request on GitHub: https://github.com/simon-anders/htseq/issues SimonSimon AndersThu, 19 Sep 2019 10:19:21 -0000https://sourceforge.net/p/htseq/support-requests/35/?limit=25#b4a3https://sourceforge.net/p/htseq/support-requests/35/htseq count problemkaty adlerWed, 18 Sep 2019 16:01:16 -0000https://sourceforge.net/p/htseq/support-requests/35/https://sourceforge.net/p/htseq/code/281/last commit to Sourceforge SVN; new repo is htt...Simon AndersWed, 24 Feb 2016 13:48:58 -0000https://sourceforge.net/p/htseq/code/281/https://sourceforge.net/p/htseq/feature-requests/5/htseq-count: option to count all alignments.Ariel PaulsonMon, 25 Jan 2016 22:32:56 -0000https://sourceforge.net/p/htseq/feature-requests/5/https://sourceforge.net/p/htseq/support-requests/34/BAM and SAM readers cannot parse "=" in CIGAR formatAdam Rivers Thu, 28 May 2015 22:12:37 -0000https://sourceforge.net/p/htseq/support-requests/34/https://sourceforge.net/p/htseq/support-requests/33/Htseq throws error for exonic read countsAlva Rani JamesThu, 26 Mar 2015 14:49:53 -0000https://sourceforge.net/p/htseq/support-requests/33/https://sourceforge.net/p/htseq/code/280/Implemented new functions in BAM_Reader and BAM...Paul Theodor PylThu, 12 Feb 2015 15:05:38 -0000https://sourceforge.net/p/htseq/code/280/https://sourceforge.net/p/htseq/code/279/Modified version checking behaviour to work pro...Paul Theodor PylFri, 09 Jan 2015 14:08:36 -0000https://sourceforge.net/p/htseq/code/279/https://sourceforge.net/p/htseq/support-requests/32/HTSeq count txt file first line emptyZachSat, 06 Sep 2014 18:21:44 -0000https://sourceforge.net/p/htseq/support-requests/32/https://sourceforge.net/p/htseq/code/278/Simon AndersSat, 09 Aug 2014 18:54:43 -0000https://sourceforge.net/p/htseq/code/278/https://sourceforge.net/p/htseq/code/277/updates to documentationSimon AndersSat, 09 Aug 2014 18:38:10 -0000https://sourceforge.net/p/htseq/code/277/https://sourceforge.net/p/htseq/support-requests/1/?limit=50#5cb4status: open --> closedAnonymousMon, 28 Jul 2014 20:36:37 -0000https://sourceforge.net/p/htseq/support-requests/1/?limit=50#5cb4https://sourceforge.net/p/htseq/support-requests/31/?limit=25#8690No, because htseq-count is specifically designed for differential-expression calling,...Simon AndersTue, 20 May 2014 12:42:53 -0000https://sourceforge.net/p/htseq/support-requests/31/?limit=25#8690https://sourceforge.net/p/htseq/support-requests/31/Paired end reads, bacterial genomeGayle McEwenMon, 05 May 2014 12:38:14 -0000https://sourceforge.net/p/htseq/support-requests/31/https://sourceforge.net/p/htseq/code/276/tagging 0.6.1p1Simon AndersSun, 13 Apr 2014 20:06:15 -0000https://sourceforge.net/p/htseq/code/276/https://sourceforge.net/p/htseq/code/275/fixed wrong version number in _version.pySimon AndersSun, 13 Apr 2014 20:05:47 -0000https://sourceforge.net/p/htseq/code/275/https://sourceforge.net/p/htseq/code/274/tagging release 0.6.1Simon AndersSun, 13 Apr 2014 18:41:08 -0000https://sourceforge.net/p/htseq/code/274/https://sourceforge.net/p/htseq/support-requests/30/Counts on single and paired ends reads merged bam fileamullerTue, 25 Mar 2014 16:19:48 -0000https://sourceforge.net/p/htseq/support-requests/30/https://sourceforge.net/p/htseq/code/273/one more question added to htseq-count FAQSimon AndersThu, 27 Feb 2014 17:22:46 -0000https://sourceforge.net/p/htseq/code/273/https://sourceforge.net/p/htseq/code/272/minor formatting in docsSimon AndersThu, 27 Feb 2014 17:03:32 -0000https://sourceforge.net/p/htseq/code/272/https://sourceforge.net/p/htseq/code/271/version 0.6.1 Simon AndersThu, 27 Feb 2014 16:51:47 -0000https://sourceforge.net/p/htseq/code/271/https://sourceforge.net/p/htseq/code/270/- added BED parserSimon AndersThu, 27 Feb 2014 16:05:52 -0000https://sourceforge.net/p/htseq/code/270/https://sourceforge.net/p/htseq/code/269/added otherparsers.rst, which was missing in pr...Simon AndersThu, 27 Feb 2014 14:39:16 -0000https://sourceforge.net/p/htseq/code/269/https://sourceforge.net/p/htseq/code/268/moved VCF docu to otherparsers.rstSimon AndersThu, 27 Feb 2014 14:34:27 -0000https://sourceforge.net/p/htseq/code/268/https://sourceforge.net/p/htseq/code/267/added GenomicArrayOfSets.svg, which was missing...Simon AndersWed, 26 Feb 2014 16:38:45 -0000https://sourceforge.net/p/htseq/code/267/https://sourceforge.net/p/htseq/code/266/version 0.6.0Simon AndersWed, 26 Feb 2014 16:34:27 -0000https://sourceforge.net/p/htseq/code/266/https://sourceforge.net/p/htseq/code/265/finished improved htseq-count and updated docum...Simon AndersWed, 26 Feb 2014 14:41:54 -0000https://sourceforge.net/p/htseq/code/265/https://sourceforge.net/p/htseq/code/264/count2 now works and is testedSimon AndersTue, 25 Feb 2014 17:27:10 -0000https://sourceforge.net/p/htseq/code/264/https://sourceforge.net/p/htseq/code/263/Fixed wiggle parser and some weird syntax error...Paul Theodor PylThu, 20 Feb 2014 09:15:10 -0000https://sourceforge.net/p/htseq/code/263/https://sourceforge.net/p/htseq/code/262/WIG_Reader initial draftPaul Theodor PylWed, 19 Feb 2014 15:48:16 -0000https://sourceforge.net/p/htseq/code/262/https://sourceforge.net/p/htseq/code/261/fized some more nonsense pair_SAM_alignments_wi...Simon AndersTue, 28 Jan 2014 12:16:47 -0000https://sourceforge.net/p/htseq/code/261/https://sourceforge.net/p/htseq/code/260/added 'pair_SAM_alignments_with_buffer', not ye...Simon AndersMon, 27 Jan 2014 18:04:11 -0000https://sourceforge.net/p/htseq/code/260/https://sourceforge.net/p/htseq/support-requests/_discuss/thread/b1bd1736/d5ff/a335/Dear Simon, If I interpret you correctly, than this is not a problem that HTSeq would...JahnDavikTue, 14 Jan 2014 07:29:02 -0000https://sourceforge.net/p/htseq/support-requests/_discuss/thread/b1bd1736/d5ff/a335/https://sourceforge.net/p/htseq/support-requests/_discuss/thread/b1bd1736/d5ff/If you have aligned to a transcriptome, the each gene is a different reference sequence,...Simon AndersSat, 04 Jan 2014 23:04:44 -0000https://sourceforge.net/p/htseq/support-requests/_discuss/thread/b1bd1736/d5ff/https://sourceforge.net/p/htseq/support-requests/_discuss/thread/fa601267/a145/Sorry, I can't follow your question. It sounds as if you are following some instructions...Simon AndersSat, 04 Jan 2014 23:01:59 -0000https://sourceforge.net/p/htseq/support-requests/_discuss/thread/fa601267/a145/https://sourceforge.net/p/htseq/feature-requests/4/UMI Support in htseq-count ( Patch included)Yaron de LeeuwWed, 25 Dec 2013 08:29:54 -0000https://sourceforge.net/p/htseq/feature-requests/4/https://sourceforge.net/p/htseq/support-requests/29/making the count matrix from a fasta referenceJahnDavikSat, 21 Dec 2013 06:16:30 -0000https://sourceforge.net/p/htseq/support-requests/29/https://sourceforge.net/p/htseq/support-requests/28/htseq counting problemJian WangMon, 16 Dec 2013 18:37:05 -0000https://sourceforge.net/p/htseq/support-requests/28/https://sourceforge.net/p/htseq/code/259/Simon AndersFri, 13 Dec 2013 10:09:17 -0000https://sourceforge.net/p/htseq/code/259/