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GASiC
Genome Abundance Similarity Correction
...GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. You can find the accompanying paper here: http://nar.oxfordjournals.org/content/41/1/e10.short Thanks to the great work of the SeqAn team, you can now use GASiC as a Knime workflow: https://github.com/seqan/knime_seqan_workflows/tree/master/metagenomics_gasic_workflow -
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mkvm.py is a python application that tries to tie Cobbler (https://fedorahosted.org/cobbler/), Puppet (http://www.puppetlabs.com/), and Citrix XenServer (http://www.citrix.com/xenserver) together to allow automated virtual environment rollout.
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