Open Source Java Data Visualization Software - Page 24

SPedit is a new curation environment for the Swiss-Prot and TrEMBL databases. For more information about these databases see http://www.expasy.ch/sprot/ and http://www.ebi.ac.uk/swissprot/

Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.

A basic ray tracer written in the Scala language. Features includes photon mapping and a frontend written in Groovy. Planed features are volumetric lighting and shadow photons.

A java-based 3D Visualisation tool for analysing network traffic. Written with jMonkeyEngine.

Scene Beans is an animation framework for Java2D. Scene Beans lets the programmer create animations by composing Java objects in a declarative style and hides the details of exactly how that animation is animated and rendered.

The Schedule Visualization tool is based on Eclipse 4 RCP and uses Nebula Gantt charts to visualize schedules. The tool is linked to scheduling and schedule integration algorithms which allow to generate time-triggered schedules and visualizes the calculated schedules. The generated schedule might then be exported to a C header file to update the system schedule. It also supports an online mode using a network monitor to detect if nodes are offline and updates its status in the visualization, e.g., for fault-tolerant systems. The tool expects an XML-based description for the system specification and allows to export generated schedules as XML.

Urbigene contains SciFOAF and MyFOAFExplorer, two tools used to build a scientific FOAF network from NCBI pubmed and to browse it.

An open source program that has the ability to graph data collected from scientific experiments. It will fit a variety of linear and non-linear regressions to data and will have the ability to save and print graphs.

** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html

Semtinel is an application framework for the semi-automatic creation, maintenance and analysis of hierarchical concept schemes (thesaurus, classification or ontology). Semtinel supports the development of new analysis methods and visualization techniques

SenseRank Sys: - builds the dictionaries (multidim matrices) of words’ values; - for the set utterance in certain language builds a figure in multidimensional space (in the matrix space) of values (visual schema), which is topological view of sense

XML Parser, Data Processing API and Specific Implementations for SensorML.

The purpose of SNX is to have a modular series of components that report back to a central repository and 'AI' for pattern recognition and anomoly detection. This is to help with IDS systems, and to move to the next generation of security.

The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.

Siafu simulates individual agents and their context, from home to city-wide scenarios. As a developer, you use the API to write your simulation for the purposes of data-set generation, test or visualization, optionally hooking it to your own application.

Feature extraction toolkit based on a wavelet multiscale vision model. Includes 1D signal processing sample application for line identification and classification of astronomical spectra.

A JavaFx 8 educational application that will let you visualize digital and analog signals from a binary input and let you export the chart in SVG (Everything is in progress). Digital: Bipolar, CMI, NRZ-L, NRZ-M, NRZ-S, Manchester, Manchester differential, Miller, MLT-3, pseudoternary, RZ, Unipolar. Analog: Phase, Frequency, Amplitude.

Simbrain is a java-based neural network. It is no longer being hosted here. Most information and downloads are at the homepage, www.simbrain.net. The development page is http://code.google.com/p/simbrain/

The simplechart project uses Java2D with SWT to produce a simple Eclipse plug-in for plotting data and placing other objects on a chart. Customizable. Supports interactive zooming. Developers can create new objects by implementing an simple interface.

Simulation of star movements with great visualizations of flights through star fields.

A system for developing custom XML editors with ease. XML editors are built from Java editing components.

A Catch/Replay infrastructure

SoFi (Solution Finder) is an extensible Java framework that facilitates rapid development of instructional applications to demonstrate common search and problem solving methods in the field of Artificial Intelligence.

SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/

Solvere4D is a powerful, open-source, freely available post-processor that makes it easy for anyone to generate 3D animations of 3D rigid body kinematics and kinetics, with many visualization options.